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Sunday, September 19, 2010

New Plastic Blood Could Save Lives

Scientists create 'plastic' blood

The researchers said the artificial blood was easier to store Scientists have developed an artificial plastic blood which could act as a substitute in emergencies.
 Researchers at Sheffield University said their creation could be a huge advantage in war zones.

They say that the artificial blood is light to carry, does not need to be kept cool and can be kept for longer.

The new blood is made up of plastic molecules that have an iron atom at their core, like haemoglobin, that can carry oxygen through the body.

The scientists said the artificial blood could be cheap to produce and they were looking for extra funding to develop a final prototype that would be suitable for biological testing.

'Very excited'

Dr Lance Twyman, of the university's Department of Chemistry, said: "We are very excited about the potential for this product and about the fact that this could save lives.

"Many people die from superficial wounds when they are trapped in an accident or are injured on the battlefield and can't get blood before they get to hospital.

"This product can be stored a lot more easily than blood, meaning large quantities could be carried easily by ambulances and the armed forces."

A sample of the artificial blood prototype will be on display at the Science Museum in London from 22 May as part of an exhibition about the history of plastics.

 

How plastic blood could move from test tube to battlefield

We're all familiar with the calls for blood donors. But donated blood, while valuable, also poses risks to the recipient, including diseases such as hepatitis C or HHIV, the virus that causes Aids.

Wouldn't an artificial form be better? It could be made completely sterile, and might even be manufactured in dehydrated form: just add water and you have a litre of O negative, the universally transfusible version, which could be easily transported to locations where it was needed, or stored against future need.

Lance Twyman is trying to do just that: with a PhD from the University of Kent, he's working to make usable plastic blood in his University of Sheffield laboratory.

Twyman has long been interested in creating molecules that mimic nature, including synthetic enzymes to catalyse novel reactions. Early in his career he came across porphyrins, hollow square-shaped molecules which combine readily with metals like iron. "The iron is in the centre of the molecule, just like haemoglobin," says Twyman.

Things are not quite the same in nature, of course. Although the oxygen-carrying protein haemoglobin in your red blood cells contains an iron-based porphyrin to bind oxygen reversibly (so it can grab oxygen from the air in the lungs, and then give it up at the tissues), porphyrin alone won't work. "It clumps together or ends up reacting with the oxygen rather than just binding it," says Twyman. "But if you combine porphyrin chemistry and polymer chemistry, you can make a molecule which mimics haemoglobin."

Oxygen binding

Making an artificial blood might not have occurred to Twyman were it not for a chance discussion with a cardiologist. Although perfect blood substitutes are a clinician's dream, creating something just to carry oxygen around the bloodstream seemed intriguingly feasible.

Developed over the past five years, Twyman has now done just that by combining a porphyrin with monomers that build together in a hyper-branching or tree-like structure. His molecule is remarkably similar to haemoglobin in size and shape, while providing exactly the right environment around the porphyrin core for iron to bind and release oxygen. And the polyethylene glycol (PEG), a water-soluble polymer used to assemble the branched structure is already used for medical applications.

So what does it look like? Twyman's plastic blood is a dark red water-soluble paste with the consistency of honey. As with real blood, the colour comes from the porphyrin.

Putting plastic blood into your body - even to save your life - sounds risky. But Twyman points out that porphyrins are natural. He also reckons that the polymer component would be ignored by the body's immune system; there is some reassurance from existing medical uses. So far, though, his experimentation is confined to the test tube.

"At the moment, we have no idea regarding the polymer's lifetime in the body. However, for its intended application, a short lifetime is an advantage," says Twyman. "One obvious application is the battlefield or site of a major incident where replacing blood loss quickly can save lives."

Unlike donated blood, it's easy to store and is stable at room temperature. A second-generation molecule is now being developed for more rigorous investigation and, if all goes well, human use may eventually follow.

Professor Adrian Newland, president of the Royal College of Pathologists, says that people have worked on artificial blood for many years. It remains the medical equivalent of the holy grail - mainly because small foreign molecules in blood substitutes are swiftly removed from the bloodstream by the kidneys. "The drive has been to develop a larger molecule that will stay in the circulation and carry oxygen to the tissues," Newland says.

The EU-funded Euro Blood Substitutes consortium is also undertaking such research and includes biochemist Professor Chris Cooper of the University of Essex. He says that there are two types of blood substitutes - haemoglobin-based substitutes, which use human or bovine haemoglobin, and the perfluorocarbons. "Many compounds have gone into clinical trials and there are currently two products licensed for use," Cooper says.

Twyman's work now offers a third possibility that doesn't depend on haemoglobin supplies. "It's an interesting bit of chemistry. What they have to do is prove that the molecule is stable for hours in the presence of oxygen," Cooper says. "The phrase 'plastic blood' is cute, but a bit of a red herring as all blood substitutes add PEGs [polyethylene gycols]."

Body's defences

Newland worries about using PEGs in the body in transfusion quantities, although small-scale medical use is well established in association with drug delivery. "The amount of PEG that you'd give with artificial blood is several times larger than the amount we give attached to a simple drug. There needs to be some idea of what happens to PEG if it's given in that volume," Newland says.

While Twyman cannot yet answer such concerns, he says his approach uses a branched PEG, not the simple linear PEGs found with haemoglobin-based blood substitutes. "Hb [haemoglobin] work uses Hb extracted from animal or human blood. This has to be protected from the body's defences, usually using linear PEGs. These do work, but they migrate into the fatty lining of veins, which causes toxic effects. They also cause high blood pressure and there are ethical/religious issues regarding their general use," Twyman says.

Newland says that modified haemoglobin doesn't stay in the blood circulation long and can cause allergic-type reactions. But once haemoglobin is removed from the body's red blood cells, no cross-matching is needed before use.

An oxygen-carrying molecule that mimics haemoglobin would have universal donor characteristics - although the immune response and clearance time from the bloodstream is as yet unknown.

"If you are giving artificial blood, you don't have to worry about the transmission of infection from blood from donors, shelf life and the lack of availability from donations," Newland says. "It's a very interesting concept."

While Twyman believes his work might find military use one day, the Ministry of Defence is unwilling to comment until more research has been done. Meanwhile, the plastic blood will be in "Plasticity - 100 years of making plastics" at London's Science Museum from May 22. Plastic blood may yet benefit people beyond laboratories.



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Scientists find short-sightedness gene

Scientists say they are one step closer to solving the most common eye disorder in the world - myopia or short-sightedness.

An international genetic research project studying more than 13,000 twins has uncovered a key gene that causes the disorder.

Professor David Mackey, an ophthalmologist at the Lions Eye Institute in Western Australia, was part of the project to identify the exact genes responsible for myopia.

The international study, which included researchers from the Queensland Institute of Medical Research, appears today in the journal Nature Genetics.

"We analyse usually around 600,000 DNA markers and find which markers tend to run more commonly with the feature that we are measuring - in this case myopia," says Mackey.

"And in collaboration with the twin research group in London we have been able to identify one new gene associated with myopia, mainly in older people."

Myopia epidemic

Mackey says three million Australians suffer from the condition, but there has been a myopia epidemic across Asia.

"Particularly Singapore, Taiwan, Hong Kong and now the large developing cities in China, [where] a majority of children when they finish high school are myopic, needing to wear glasses," he says.

"Now this is something that has happened really in the last 50 years and we are not sure what it is that led to this epidemic but we suspect that the east Asians are more genetically predisposed to getting myopia.

"Therefore understanding the underlying mechanism is of great importance, particularly if we are not having to supply glasses to the entire population of east Asia."

Intervention

Mackey says this gene is one of a dozen that need to be identified to help solve the bigger puzzle.

But he hopes the breakthrough will help develop new treatments and identify risk factors for the condition.

"One of these particular genes involved in the risk of myopia is something that we can actually develop a drug to intervene for, or we may be able to come up with other treatments, such as whether people should or shouldn't wear glasses all the time, whether they should get outdoors, or how much reading should they be doing," he says.

"All of these are factors that have been proposed as risk factors for developing myopia in those who are predisposed to get it."



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Biochemistry checklist for csir

1. Three compulsory lists that must be at your tips-

  • · Ketogenic and Glucogenic amino acids.
  • · Essential and Nonessential amino acids.
  • · Basic, Acidic, Sulphur containing amino acids.

2. Regulatory Enzymes of pathways e.g.

  • · Citrate synthesis in citric acid cycle.
  • · Phosphofructokinase in Glycolysis.
  • · Pyruvate dehydrogenase in Pyruvate Oxidation.
  • · Pyruvate Carboxykinase in Gluconeogenesis.
  • · Glycogen Synthase in Glycogenesis.
  • · Phosphorylase in Glycogenolysis.
  • · G6PD in PPP.
  • · HMG CoA reductase in cholesterol synthesis.

3. Search for ATP estimates e.g.,

  • · 8 ATP's per Glucose molecule in Glycolysis under aerobic conditions.
  • · 30 ATP's per Pyruvate molecule entering citric acid cycle.
  • · 129 ATP's per palmitate undergoing boxidation.

4. Look for regulatory molecules and feedback inhibitions e.g.,

  • · Glucose-6-phosphate inhibition on hexokinase.
  • · Citrate's inhibitory effect on phosphofructokinase 1.
  • · Alanine's inhibitory effect on Pyruvate kinase.
  • · Acetyl CoA's inhibitory effect on Pyruvate dehydrogenase.
  • · Long chain acyl CoA's inhibitory effect on Acetyl CoA carboxylase.

5. Look for subcellular organelles where the reactions specifically occur.

  • · Enzymes of citric acid cycle in mitochondrial matrix.
  • · Enzymes of Glycolysis in cytosol.
  • · Enzymes of pentose phosphate pathway in cytosol.
  • · Enzymes of denovo synthesis of fatty acids in cytosol.
  • · Enzymes of fatty acid oxidation in mitochondria.

6. Always have a clarity regarding precise role of various lipoproteins.

  • · HDL is cholesterol scavenger.
  • · Chylomicrons carry dietary cholesterol.
  • · VLDL are vehicles of transport of triacylglycerol from the liver to extrahepatic tissues.

7. Vitamins and their role as coenzymes e.g.,

  • · Thiamine in oxidative decarboxylation.
  • · Niacin in dehydrogenase reactions.
  • · Pantothenic acid in CoA.
  • · Pyridoxal phosphate in muscle phosphorylase.
  • · Biotin in carboxylase enzymes.
  • · Vitamin B12 to produce succinyl CoA.
  • · Folate in transfer of one-carbon units.

8. Products that accumulate in metabolic disorders e.g.,

  • · Homogenisate in urine of Alkaptonuria patients
  • · Phenyl acetyl glutamine in phenylketonuria.
  • · Xanthurenate in Vitamin B6 deficiency.
  • · Branched chain ketonuria in Mapple syrup urine disease.

9. Check for key enzymes responsible for Metabolic disorders e.g.,

  • · Glucose-6-phosphates in von Gierkes.
  • · Hepatic fructokinase in essential fructosuria.
  • · Galactose-1-phosphate uridyl transferase in Galactosemia.
  • · Cystathionine-b-synthase in homocystinuria.

10. Where NADH forms, where NADPH forms, where FADH2 forms, where substrate level phosphorylation occurs e.g.,

Are your laboratory autoclaves actually working properly?

HERE IS AN INTERESTING STEP TO AUDIT YOUR AUTOCLAVE'S FUNCTIONING..SPECIALLY FOR STUDENTS..
U ALL KNOW that autoclave is a device which is used for sterlization(heat) at laboratory as well as industrial levels.This mode of Sterlization involves a heating ,a cooling, and a HOLDING period.The temprature and pressure during holding is 121 degrees centigrade and 121 psi .
BUT, are u sure that the sterlization u perform at your laboratories is good enough??..
Here is a checking trick for it. i came to know about it during my training at CENRAL RESEARCH INSTITUTE ,KASAULI.
We can use INDICATOR TAPES while autoclaving process.chemical indicator tapes have certain chemicals which undergo a specific colour change only if right temprature and pressure conditions are attained for the required holding period( 15 minutes)..
This information may not be that good but it was something new which triggered an engineering feel within me, and to the extent i should analyze things going around.

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Wisdom teeth useful after all, have stem cells

NEW DELHI: The good for nothing painful wisdom tooth may finally have some worth.

Doctors say the wisdom tooth, which is usually extracted, is a rich source of stem cells. The soft pulp inside the tooth contains a population of cells — known as mesenchymal stromal cells — which are similar to cells found in bone marrow, a common stem cell source.

However, unlike bone marrow, tooth pulp is more easily obtained, especially in wisdom teeth that most individuals get removed anyway, said Dr Franck Chaubron from the Institute Clinident Biopharma. Dr Chaubron, who was recently in the country to set up Stemade Biotech, India's first dental stem cell bank that will be launched in a month in Chennai, said international studies conducted with stem cells extracted from a wisdom tooth have shown tremendous promise in regenerating damaged bones, cornea and cardiac muscles.

"You don't necessarily have to remove the wisdom tooth to extract the stem cells from the pulp. Usually, the pulp has a million cells, 20% of which will be stem cells. It can be extracted from a person aged between 12 and 30. Dental stem cells are very easy to extract. They have high quantity of stem cells in them and can be applied for many regenerative applications," Dr Chaubron told TOI.

On Saturday, in a new study in the "Journal of Biological Chemistry" scientists from Japan's National Institute of Advanced Industrial Science and Technology confirmed that third molars — commonly known as wisdom teeth — are a valuable reservoir of stem cells.

"Thus everyone might be carrying around his or her own personal stem-cell repository should he or she ever need some," the scientists said.

The researchers, led by Hajime Ohgushi, collected tooth samples from three donors and managed to generate a series of stem cell lines which displayed varying degrees of "robustness but in some cases proliferated quite well, up to 100 times more efficiently than typical skin-cell-derived stem cells. The molar-derived cells also could differentiate into many other cell types including beating cardiomyocytes."

Shailesh Gadre, MD of Stemade, said, "We have also harvested excellent amounts of stem cells from children's milk tooth. Wisdom tooth extraction is a common medical procedure in developed nations. If done in a sterilised setting, we can freeze the cells in liquid nitrogen for years until needed by which time its new applications will be found by researchers working on dental stem cells."

Scientists say the dental stem cells are located in areas next to nerve and blood vessels within the pulp of the tooth. Stem cells are master cells of the body that are not yet specialised and differentiated for a particular function/organ or tissue application. These stem cells have been found in tissues such as brain, bone marrow, blood, blood vessels, skeletal muscles, skin and liver.

They remain in a quiescent or non-dividing state for years until activated by disease or tissue injury.

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Now one blood group fits everyone

A new discovery was made by international scientific team who established a way to convert one blood group into another.

The finding can revolutionize medicine as it means there will be no lack of blood supplies. The study conducted by experts from University of Copenhagen published their results in Nature Biotechnology journal, where it is stated that O blood group can be a source for all the other blood types (A, B and AB).

If earlier the mistake of giving wrong blood group could lead to hazardous reactions from the immune system and in severe cases result in death, now all blood groups can be converted into one O group and used furthermore.

It is known that blood group of those who have A and B groups has sugar molecules that respond differently to other blood group. People AB blood group is the rarest one and their blood contains both antigens. Transfusion of the different than individual's blood group is a serious impact on the immune system and incompatibility may become crucial.

Studying more than 2,500 bacteria and fungi experts found proteins that can act as destroyers of sugar molecules. Scientists discovered bacterial enzymes from Elizabethkingia meningosepticum and Bacterioides fragilis that are able to remove sugar molecules from the blood cells thus making one blood match other blood groups.

After test trials new blood where A, B and AB blood groups will be converted into O group is anticipated to be used in hospitals.

The National Blood Service now has 40,000 of blood samples that can be enough for about five days.

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Saturday, September 18, 2010

RFRI Jorhat Botany/Zoology JRF Vacancies
Title of the project with PI name: Assessment of insect pest problems of selected bamboo species in Assam and their management
PI: Sh. R. Raja Rishi
Junior Research Fellow (01)
Essential Qualification M.Sc. in Agriculture Entomology/M.Sc. Zoology with Entomology specialization/M.Sc. life Science.
Desirable qualification: Entomology background and knowledge in computer application
Emoluments: Rs. 12,000 + HRA as per rule
As Above Initially for one year which may be extended
The Posts are purely temporary. The Selected candidate may not claim for regular appointment at this Institute. The JRF, Field Assistants and Technical Assistants will have to assist the P.I. in doing the different field works. The walk-in-interview will be held on 8th July, 2010 (11.00 AM) in the Conference Hall, Rain Forest Research Institute, Jorhat, Assam.
The Candidates are requested to report the reception between 9.30 AM to 10.30 AM and submit their applications on the prescribed format. Original Certificates must be produced at the time of Interview. Candidate may apply more than one post. The decision of the Director, RFRI, Jorhat will be final and binding in all the matter pertaining to screening, interview and final selection.

No TA/DA will be admissible for appearing in the interview.
Adress:
Rain Forest Research Institute
P. Box No. 136
Jorhat, Assam
Source: http://www.icfre.org/UserFiles/File/advertisement_job/RFRI-Recruitment-JRF-&-FA-280610.pdf

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Saturday, September 11, 2010

Saturday, September 4, 2010

csir questions

CSIR Questions !

Todays set of Questions are:
1) ras mutations are inherited to next generation through?
(a) environmental factors
(b) germ line mutations
(c) somatic mutation
(d) spontanous mutation
(e) none

2) Aberrent activation of------- pathway can contribute to the oncogenicity?
(a) anaerobic
(b) mitogenic
(c) carboxylic
(d) aerobic
(e) all

3) Which tumor suppressor gene is most frequently mutated in human cancers?
(a) RB12
(b) TP53
(c) RB84
(d) TP13
(e) ALL

4) Name one prominent factor in the response that arrests the cell
cycle which is activated by P53?
(a) TP53
(b) p21
(c) P-RB
(d) P-APC
(e) RB21

5) p21 is synthesized due to the cell stress by inactivating---------?
(a) DNA repair
(b) cyclins/CDKs complex
(c) protein complex
(d) DNA transcription
(e) all

6) START usually occurs during?
(a) mid-S
(b) mid-G1
(c) end of S
(d) mid-G2
(e) end-G1

7) The most common form of a dominant negative mutant is one that
forms -------- protein containing both mutant and wild type subunits
in p53?
(a) monomeric
(b) homomeric
(c) heteromeric
(d) polymeric
(e) none

8) Tumor T antigens have a variety of function in --------- type of cycle
(a) translation
(b) lytic
(c) lysogenic
(d) translocation
(e) reciprocation

9) The important of the connection between tumorigenesis and loss of
apoptosis is also shown by the properties of the ----- oncogenes?
(a) RB
(b) bcl2
(c) bcl8
(d) p53
(e) all


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An HIV vaccine is the theoretical vaccine which would be given to
persons without HIV in order to vaccinate them against getting HIV,
the virus which causes AIDS. No effective vaccine against HIV exists.
As there is no known cure for AIDS, the search for a vaccine has
become part of medical approaches against the disease.
It has been known for many years that HIV is an extremely difficult
virus to render harmless, and no cure presently exists. Research into
a vaccine is one of several strategies to reduce the worldwide harm
from AIDS, with other approaches based upon antiviral treatments such
as highly active antiretroviral therapy (HAART), and social approaches
such as safe sex.
There is evidence that a vaccine may be possible. Work with monoclonal
antibodies (MAb) has proven that the human body can defend itself
against HIV, and certain individuals remain asymptomatic for decades
after HIV infection. More recently in 2009, a number of potential
candidates for antibodies and early stage results from clinical trials
have been announced by various teams. However these are early results,
and have either not been developed to the point of human testing, or
not fully peer reviewed and replicated by other teams, at this time.

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